Biocfilecache r
Webdep: r-base-core (>= 4.0.3-1) GNU R core of statistical computation and graphics system dep: r-bioc-annotationdbi GNU R Annotation Database Interface for BioConductor dep: r-bioc-biocfilecache GNU R management of files across sessions dep: r-cran-httr GNU R tools for working with URLs and HTTP dep: r-cran-openssl Webadep: r-cran-dbplyr GNU R dplyr back end for databases adep: r-cran-dplyr GNU R grammar of data manipulation adep: r-cran-rsqlite Database Interface R driver for SQLite adep: r-cran-dbi GNU R package providing a generic database interface adep: r-cran-rappdirs GNU R application directories adep: r-cran-filelock
Biocfilecache r
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WebSep 25, 2015 · looks like monocle is trying to unload and install plyr again but it cant because other packages namely ggplot2, scales and reshape2 has dependency on plyr.Please remove these packages using . remove.packages("ggplot2") remove.packages("reshape2") remove.packages("scales") and finally. … WebTo install this package, start R (version "4.1") and enter: if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("BiocFileCache") For …
WebJun 20, 2024 · Place an exclusive or shared lock on a file. It uses 'LockFile' on Windows and 'fcntl' locks on Unix-like systems. WebI have an issue with creating a txmeta transcriptome with BiocFileManager (R 4.0.1, tximeta 1.8.4 and tximeta development checkout on Ubuntu 20.04 LTS with SQLite 3.3). The cache file is touched, but not filled. An rds file referencing the gtf file of the transcriptome is created.
WebApr 14, 2024 · This seems challenging. The first thing to do is to make this reproducible. The code biomaRt:: biomartCacheInfo() 'works for me' on both my native (macOS) and … WebOct 25, 2024 · I'm getting this warning every time I install a package and sometimes when I just load one with library(): Warning message: In readLines(file, skipNul = TRUE) : cannot open compressed file 'C:/Us...
Webrekado pushed a commit to branch master in repository guix. commit 68a9d9f26a306a54c79536a832d35d856f7179d3 Author: Ricardo Wurmus Date: Sun Dec 15 ...
WebMar 31, 2016 · Fawn Creek Township is located in Kansas with a population of 1,618. Fawn Creek Township is in Montgomery County. Living in Fawn Creek Township offers … software for tax return ukWebThis package creates a persistent on-disk cache of files that the user can add, update, and retrieve. It is useful for managing resources (such as custom Txdb objects) that are … software for teachers discountWeb# # BiocFileCache / RSQLite interface.sql_create_db <-function (bfc) {fl <-.sql_dbfile(bfc) if (! file.exists(fl)) {sql <-strsplit(.sql_cmd("-- CREATE_DB "), "; ")[[1]] tryCatch({info < … slow food festivalWebMay 15, 2024 · Updating Out of Date BiocManager Packages. When I run BiocManager::valid (), it tells me 3 packages are out of date, however when I try to update them it doesn't work, I' m not sure why! Please see the code below. I am only just learning how to use Bioconductor, so I apologise if this is something obvious! software for teachersWebAn opinionated framework for building a production-ready 'Shiny' application. This package contains a series of tools for building a robust 'Shiny' application from start to finish. software for tds returnWebAug 14, 2024 · No, that only tells that installation failed, but not why it fails. Here is the kind of output we need. Here is an example output that tells us that the installation fails because data 19_Q2 is missing, which is the result of this computer running the release version of Bioconductor (i.e 3.9). software for testing gpuWebJun 10, 2012 · Sorry to be back so soon with a simple installation question, but my inability to solve it myself is seriously impairing my productivity. Anyway, I tried installing GenomicFeatures as suggested by ... slow food farmers market